Biomechanic Mess!

I think biomechanically I am a mess. I can't seem to get a comfortable position as of late on the bike. Either one leg is shorter than the other, I'm dropping a hip, I have supponation or pronation, I'm pigeon-toed, or something else is just plain messed up because I'm always fiddling with my cleats and pedal wedges. Last week I took out the pedal wedges that I've had in all year to see if they were the cause of some recent knee pain. Well, I have to say that after a week I have no more knee pain but it seems that I'm always trying to shift my weight on the seat to lean to the right. I feel like I'm dropping my left hip so I keep shifting to the right and then because of my left hip drop my right foot is pointing inward and I have to adjust my cleat to allow for my foot to point in. I just don't get it because I've never had these problems previously. It seems that I can't get square on the seat. I tried to put the wedge back on one shoe to see if my left leg is shorter and maybe that is why I'm dropping that hip. I noticed my seat was pointing a bit to the left and I centered that a little better and that may have helped but I can't tell until I ride more. If this keeps up much longer I'm going to drive myself crazy adjusting my shoes all the time.
Anyways, the last few days I've completed my rides as scheduled and have done 2 days of weight work as well. Monday was a rest day on the bike and I did do my 4 sets of weights. Yesterday was 1.5 hours on the bike and I did that with 5 reps of PowerStarts which help build explosive power. Today I just did my 45 minute Recovery Ride and also did my 4 sets of weights. I feel really strong aside from the freakin' hip, knee, foot issue. As I approach the December 1st date of one year from when I started training last year, I am just in so much better shape that I'd have to say I'm starting at a fitness level that I would've had in about May of this year. That puts me about 6 months ahead of last year going in to my one year anniversary of being back on the bike in terms of fitness. I didn't feel good until about August of this year and hopefully that is what I will be feeling in April of next year. I'm anxiously counting off the days until next Spring, only like 4 and a half months to go! God, I hope it goes quick. Well, tomorrow I will be doing 1hr 45 mins on the trainer and then Friday is a rest day and I'll have some long rides again this weekend. I'll update on Friday night with my schedule for the weekend and hopefully the weather holds out so that I can get in some good riding outside. Until next time.........